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  • Introduction
  • Overview
  • AML FLT3-ITD Detection
  • Acute Myeloid Leukemia (AML) Overview
  • FLT3: An Attractive Drug Target in AML
  • FLT3-ITD Schematic
  • FLT3-ITD Amplicon Lengths
  • FLT3-ITD Schematic Revisited
  • PACMonSTR: A tool for PacBio TR detection
  • Tandem Repeat (and ITD) Detection
  • Tandem Repeat (and ITD) Detection: What does real data look like?
  • Amplicon Lengths
  • Summary of AML FLT3-ITD Detection
  • WGS with PacBio
  • Error Correction Schematic (HGAP): PacBio
  • Evolutionary Dynamics of Vibrio cholerae O1 following a Single-Source Introduction to Haiti
  • HuPac: NA12878 Resequencing
  • Error Correction Schematic (HGAP): PacBio
  • The Status Quo
  • Times are Changing
  • NA12878 Sequencing Summary
  • NA12878 TRs
  • NA12878 Tandem Repeats
  • Homozygous and Heterozygous Calls are Clearly Observed Even with Raw Reads
  • SV Detection with Paired End Sequencing
  • Problem with pairs
  • SV with Multireads
  • MultRead-SV Overview
  • MultiRead-SV Overview
  • Structural Variation Generalization Overview
  • 1000 Genomes Chr1: CLR Simulation
  • Aside: Unambiguous Repeat Mappability
  • Venter Chromosome 17 Simulation
  • Overlap of Illumina and PacBio with "Gold Standard" (Ex: Deletions)
  • Short Reads Misses: Cassette Alu Repeat Tangles
  • Short Read Misses: Fields of Repeats
  • 1000 Genome SVs
  • Inversion Example
  • Overlapping Inversion Example
  • Local Assembly of SVs
  • Multi-Event Example
  • Centromic Interval Resolution: 50kb+ Intervals on Chr10
  • Summary
  • Acknowledgements
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  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai
  • Speaker: Ali Bashir, PhD / Icahn School of Medicine at Mount Sinai