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  • Intro
  • Solving The Diploid Assembly Problem
  • Why Do We See Bubbles
  • The Falcon Unzip Process
  • Phasing Read Into Haplotype Groups
  • Question: How To Resolve Structural Variations & HET-SNPS Phasing At Once
  • Merge Haplotype Information and "Unzip"
  • Put Everything Together
  • Polishing: Allele-Specific Alignment for Final Consensus
  • Construct Arabidopsis Thaliana COL-0 X CVI-0 Diploid F1 Line
  • Diploid Assembly Primary Contigs and Haplotigs
  • Arabidopsis Thaliana F1 Diploid Assembly Statistics
  • Evaluate the Diploid Assembly Result
  • Compare F1 Assembly to then Inbred Assemblies
  • Annotation Comparison
  • Other Smaller and Larger Diploid Genomes
  • Summary
  • Acknowledgements
  • Q&A
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  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio
  • Speaker: Jason Chin, PhD / PacBio