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- Introduction
- The Value of De Novo, Finished Microbial Genomes
- Hybrid Solutions for De Novo Assemblies
- Non-Hybrid Strategy for De Novo Assemblies
- Hierarchical Genome Assembly Process (HGAP)
- HGAP Example Meiothermus Ruber
- High Consensus Accuracy
- Lack of GC Bias - High GC
- Lack of GC Bias - Low GC
- Requirements for Achieving High-Quality Finished Genomes
- Finished Genomes in Infectious Disease
- The Pertussis Genome is Extremely Repetitive
- Complete Pertussis Genomes
- Finished Pertussis Genomes
- Genome Organization Comparison
- Organization of Virulence Genes Differs Between Strains
- Phylogeny
- Large Structural Variations
- High Mobile Element Diversity
- Foodborne Pathogens
- 100K Foodborne Pathogen Genome Project
- Public Health Outcomes
- Salmonella Phylogenomics
- Salmonella HGAP Assemblies
- Addressing Active Outbreaks with Finished Genomes
- Epigenome Information
- Salmonella Strains Epigenome Diversity
- Salmonella Epigenomes
- Listeria monocytogenes Epigenomes
- De Novo Genome & Epigenome from a Single SMRT Cell
- Acknowledgements

- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio
- Speaker: Jonas Korlach, PhD / PacBio